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Leapfrogging into new territory: How Mascarene ridged frogs diversified across Africa and Madagascar to maintain their ecological niche.

Identifieur interne : 000019 ( Main/Exploration ); précédent : 000018; suivant : 000020

Leapfrogging into new territory: How Mascarene ridged frogs diversified across Africa and Madagascar to maintain their ecological niche.

Auteurs : Breda M. Zimkus [États-Unis] ; Lucinda P. Lawson [États-Unis] ; Michael F. Barej [Allemagne] ; Christopher D. Barratt [Suisse] ; Alan Channing [Afrique du Sud] ; Katrina M. Dash [États-Unis] ; J Maximilian Dehling [Allemagne] ; Louis Du Preez [Afrique du Sud] ; Philip-Sebastian Gehring [Allemagne] ; Eli Greenbaum [États-Unis] ; Václav Gvoždík [République tchèque] ; James Harvey [Afrique du Sud] ; Jos Kielgast [Danemark] ; Chifundera Kusamba [Oman] ; Zoltán T. Nagy [Belgique] ; Maciej Pabijan [Pologne] ; Johannes Penner [Allemagne] ; Mark-Oliver Rödel [Allemagne] ; Miguel Vences [Allemagne] ; Stefan Lötters [Allemagne]

Source :

RBID : pubmed:27664344

Abstract

The Mascarene ridged frog, Ptychadena mascareniensis, is a species complex that includes numerous lineages occurring mostly in humid savannas and open forests of mainland Africa, Madagascar, the Seychelles, and the Mascarene Islands. Sampling across this broad distribution presents an opportunity to examine the genetic differentiation within this complex and to investigate how the evolution of bioclimatic niches may have shaped current biogeographic patterns. Using model-based phylogenetic methods and molecular-clock dating, we constructed a time-calibrated molecular phylogenetic hypothesis for the group based on mitochondrial 16S rRNA and cytochrome b (cytb) genes and the nuclear RAG1 gene from 173 individuals. Haplotype networks were reconstructed and species boundaries were investigated using three species-delimitation approaches: Bayesian generalized mixed Yule-coalescent model (bGMYC), the Poisson Tree Process model (PTP) and a cluster algorithm (SpeciesIdentifier). Estimates of similarity in bioclimatic niche were calculated from species-distribution models (maxent) and multivariate statistics (Principal Component Analysis, Discriminant Function Analysis). Ancestral-area reconstructions were performed on the phylogeny using probabilistic approaches implemented in BioGeoBEARS. We detected high levels of genetic differentiation yielding ten distinct lineages or operational taxonomic units, and Central Africa was found to be a diversity hotspot for these frogs. Most speciation events took place throughout the Miocene, including "out-of-Africa" overseas dispersal events to Madagascar in the East and to São Tomé in the West. Bioclimatic niche was remarkably well conserved, with most species tolerating similar temperature and rainfall conditions common to the Central African region. The P. mascareniensis complex provides insights into how bioclimatic niche shaped the current biogeographic patterns with niche conservatism being exhibited by the Central African radiation and niche divergence shaping populations in West Africa and Madagascar. Central Africa, including the Albertine Rift region, has been an important center of diversification for this species complex.

DOI: 10.1016/j.ympev.2016.09.018
PubMed: 27664344


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<name sortKey="Du Preez, Louis" sort="Du Preez, Louis" uniqKey="Du Preez L" first="Louis" last="Du Preez">Louis Du Preez</name>
<affiliation wicri:level="1">
<nlm:affiliation>African Amphibian Conservation Research Group, Unit for Environmental Sciences and Management, North-West University, Potchefstroom 2520, South Africa; South African Institute for Aquatic Biodiversity, Somerset Street, Grahamstown 6139, South Africa. Electronic address: Louis.DuPreez@nwu.ac.za.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>African Amphibian Conservation Research Group, Unit for Environmental Sciences and Management, North-West University, Potchefstroom 2520, South Africa; South African Institute for Aquatic Biodiversity, Somerset Street, Grahamstown 6139</wicri:regionArea>
<wicri:noRegion>Grahamstown 6139</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Gehring, Philip Sebastian" sort="Gehring, Philip Sebastian" uniqKey="Gehring P" first="Philip-Sebastian" last="Gehring">Philip-Sebastian Gehring</name>
<affiliation wicri:level="1">
<nlm:affiliation>Fakultät für Biologie Universität Bielefeld, Abt. Biologiedidaktik, Universitätsstraße 25, 33615 Bielefeld, Germany. Electronic address: SebastianGehring@web.de.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Fakultät für Biologie Universität Bielefeld, Abt. Biologiedidaktik, Universitätsstraße 25, 33615 Bielefeld</wicri:regionArea>
<wicri:noRegion>33615 Bielefeld</wicri:noRegion>
<wicri:noRegion>33615 Bielefeld</wicri:noRegion>
<wicri:noRegion>33615 Bielefeld</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Greenbaum, Eli" sort="Greenbaum, Eli" uniqKey="Greenbaum E" first="Eli" last="Greenbaum">Eli Greenbaum</name>
<affiliation wicri:level="2">
<nlm:affiliation>Department of Biological Sciences, University of Texas at El Paso, 500 W. University Ave., El Paso, TX 79968, USA. Electronic address: egreenbaum2@utep.edu.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biological Sciences, University of Texas at El Paso, 500 W. University Ave., El Paso, TX 79968</wicri:regionArea>
<placeName>
<region type="state">Texas</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Gvozdik, Vaclav" sort="Gvozdik, Vaclav" uniqKey="Gvozdik V" first="Václav" last="Gvoždík">Václav Gvoždík</name>
<affiliation wicri:level="1">
<nlm:affiliation>Institute of Vertebrate Biology, Czech Academy of Sciences, 603 65 Brno, Czech Republic; National Museum, Department of Zoology, 19300 Prague, Czech Republic. Electronic address: vaclav.gvozdik@ivb.cz.</nlm:affiliation>
<country xml:lang="fr">République tchèque</country>
<wicri:regionArea>Institute of Vertebrate Biology, Czech Academy of Sciences, 603 65 Brno, Czech Republic; National Museum, Department of Zoology, 19300 Prague</wicri:regionArea>
<placeName>
<settlement type="city">Prague</settlement>
<region type="région" nuts="2">Bohême centrale</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Harvey, James" sort="Harvey, James" uniqKey="Harvey J" first="James" last="Harvey">James Harvey</name>
<affiliation wicri:level="1">
<nlm:affiliation>Harvey Ecological, 35 Carbis Road, Pietermaritzburg 3201, KwaZulu-Natal, South Africa. Electronic address: info@harveyecological.co.za.</nlm:affiliation>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Harvey Ecological, 35 Carbis Road, Pietermaritzburg 3201, KwaZulu-Natal</wicri:regionArea>
<wicri:noRegion>KwaZulu-Natal</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Kielgast, Jos" sort="Kielgast, Jos" uniqKey="Kielgast J" first="Jos" last="Kielgast">Jos Kielgast</name>
<affiliation wicri:level="3">
<nlm:affiliation>Department of Biology, University of Copenhagen, Copenhagen, Denmark. Electronic address: joskielgast@hotmail.com.</nlm:affiliation>
<country xml:lang="fr">Danemark</country>
<wicri:regionArea>Department of Biology, University of Copenhagen, Copenhagen</wicri:regionArea>
<placeName>
<settlement type="city">Copenhague</settlement>
<region type="région" nuts="2">Hovedstaden</region>
</placeName>
</affiliation>
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<author>
<name sortKey="Kusamba, Chifundera" sort="Kusamba, Chifundera" uniqKey="Kusamba C" first="Chifundera" last="Kusamba">Chifundera Kusamba</name>
<affiliation wicri:level="1">
<nlm:affiliation>Centre de Recherche en Sciences Naturelles, Département de Biologie, Lwiro, The Democratic Republic of the Congo. Electronic address: chifkusamba@gmail.com.</nlm:affiliation>
<country wicri:rule="url">Oman</country>
</affiliation>
</author>
<author>
<name sortKey="Nagy, Zoltan T" sort="Nagy, Zoltan T" uniqKey="Nagy Z" first="Zoltán T" last="Nagy">Zoltán T. Nagy</name>
<affiliation wicri:level="3">
<nlm:affiliation>Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Invalidenstrasse 43, 10115 Berlin, Germany; Joint Experimental Molecular Unit, Royal Belgian Institute of Natural Sciences, Rue Vautier 29, 1000 Brussels, Belgium. Electronic address: ztnagy@naturalsciences.be.</nlm:affiliation>
<country xml:lang="fr">Belgique</country>
<wicri:regionArea>Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Invalidenstrasse 43, 10115 Berlin, Germany; Joint Experimental Molecular Unit, Royal Belgian Institute of Natural Sciences, Rue Vautier 29, 1000 Brussels</wicri:regionArea>
<placeName>
<region type="land" nuts="2">Vienne (Autriche)</region>
<settlement type="city">Vienne (Autriche)</settlement>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Pabijan, Maciej" sort="Pabijan, Maciej" uniqKey="Pabijan M" first="Maciej" last="Pabijan">Maciej Pabijan</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Comparative Anatomy, Institute of Zoology, Jagiellonian University, Gronostajowa 9, 30-387 Kraków, Poland. Electronic address: maciej.pabijan@uj.edu.pl.</nlm:affiliation>
<country xml:lang="fr">Pologne</country>
<wicri:regionArea>Department of Comparative Anatomy, Institute of Zoology, Jagiellonian University, Gronostajowa 9, 30-387 Kraków</wicri:regionArea>
<wicri:noRegion>30-387 Kraków</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Penner, Johannes" sort="Penner, Johannes" uniqKey="Penner J" first="Johannes" last="Penner">Johannes Penner</name>
<affiliation wicri:level="3">
<nlm:affiliation>Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Invalidenstrasse 43, 10115 Berlin, Germany; Wildlife Ecology & Management, University of Freiburg, Tennenbacher Str. 4, 79106 Freiburg, Germany. Electronic address: johannes.penner@mfn-berlin.de.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Invalidenstrasse 43, 10115 Berlin, Germany; Wildlife Ecology & Management, University of Freiburg, Tennenbacher Str. 4, 79106 Freiburg</wicri:regionArea>
<placeName>
<region type="land" nuts="1">Bade-Wurtemberg</region>
<region type="district" nuts="2">District de Fribourg-en-Brisgau</region>
<settlement type="city">Fribourg-en-Brisgau</settlement>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Rodel, Mark Oliver" sort="Rodel, Mark Oliver" uniqKey="Rodel M" first="Mark-Oliver" last="Rödel">Mark-Oliver Rödel</name>
<affiliation wicri:level="3">
<nlm:affiliation>Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Invalidenstrasse 43, 10115 Berlin, Germany. Electronic address: mo.roedel@mfn-berlin.de.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Invalidenstrasse 43, 10115 Berlin</wicri:regionArea>
<placeName>
<region type="land" nuts="3">Berlin</region>
<settlement type="city">Berlin</settlement>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Vences, Miguel" sort="Vences, Miguel" uniqKey="Vences M" first="Miguel" last="Vences">Miguel Vences</name>
<affiliation wicri:level="1">
<nlm:affiliation>Division of Evolutionary Biology, Zoological Institute, Technical University of Braunschweig, Mendelssohnstraße. 4, 38106 Braunschweig, Germany. Electronic address: m.vences@tu-braunschweig.de.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Division of Evolutionary Biology, Zoological Institute, Technical University of Braunschweig, Mendelssohnstraße. 4, 38106 Braunschweig</wicri:regionArea>
<wicri:noRegion>38106 Braunschweig</wicri:noRegion>
<wicri:noRegion>38106 Braunschweig</wicri:noRegion>
<wicri:noRegion>38106 Braunschweig</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Lotters, Stefan" sort="Lotters, Stefan" uniqKey="Lotters S" first="Stefan" last="Lötters">Stefan Lötters</name>
<affiliation wicri:level="1">
<nlm:affiliation>Trier University, Department of Biogeography, 54286 Trier, Germany. Electronic address: loetters@uni-trier.de.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Trier University, Department of Biogeography, 54286 Trier</wicri:regionArea>
<wicri:noRegion>54286 Trier</wicri:noRegion>
<wicri:noRegion>54286 Trier</wicri:noRegion>
<wicri:noRegion>54286 Trier</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series>
<title level="j">Molecular phylogenetics and evolution</title>
<idno type="eISSN">1095-9513</idno>
<imprint>
<date when="2017" type="published">2017</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">The Mascarene ridged frog, Ptychadena mascareniensis, is a species complex that includes numerous lineages occurring mostly in humid savannas and open forests of mainland Africa, Madagascar, the Seychelles, and the Mascarene Islands. Sampling across this broad distribution presents an opportunity to examine the genetic differentiation within this complex and to investigate how the evolution of bioclimatic niches may have shaped current biogeographic patterns. Using model-based phylogenetic methods and molecular-clock dating, we constructed a time-calibrated molecular phylogenetic hypothesis for the group based on mitochondrial 16S rRNA and cytochrome b (cytb) genes and the nuclear RAG1 gene from 173 individuals. Haplotype networks were reconstructed and species boundaries were investigated using three species-delimitation approaches: Bayesian generalized mixed Yule-coalescent model (bGMYC), the Poisson Tree Process model (PTP) and a cluster algorithm (SpeciesIdentifier). Estimates of similarity in bioclimatic niche were calculated from species-distribution models (maxent) and multivariate statistics (Principal Component Analysis, Discriminant Function Analysis). Ancestral-area reconstructions were performed on the phylogeny using probabilistic approaches implemented in BioGeoBEARS. We detected high levels of genetic differentiation yielding ten distinct lineages or operational taxonomic units, and Central Africa was found to be a diversity hotspot for these frogs. Most speciation events took place throughout the Miocene, including "out-of-Africa" overseas dispersal events to Madagascar in the East and to São Tomé in the West. Bioclimatic niche was remarkably well conserved, with most species tolerating similar temperature and rainfall conditions common to the Central African region. The P. mascareniensis complex provides insights into how bioclimatic niche shaped the current biogeographic patterns with niche conservatism being exhibited by the Central African radiation and niche divergence shaping populations in West Africa and Madagascar. Central Africa, including the Albertine Rift region, has been an important center of diversification for this species complex.</div>
</front>
</TEI>
<affiliations>
<list>
<country>
<li>Afrique du Sud</li>
<li>Allemagne</li>
<li>Belgique</li>
<li>Danemark</li>
<li>Oman</li>
<li>Pologne</li>
<li>République tchèque</li>
<li>Suisse</li>
<li>États-Unis</li>
</country>
<region>
<li>Bade-Wurtemberg</li>
<li>Berlin</li>
<li>Bohême centrale</li>
<li>District de Fribourg-en-Brisgau</li>
<li>Hovedstaden</li>
<li>Massachusetts</li>
<li>Ohio</li>
<li>Texas</li>
<li>Vienne (Autriche)</li>
<li>Virginie</li>
</region>
<settlement>
<li>Berlin</li>
<li>Cambridge (Massachusetts)</li>
<li>Copenhague</li>
<li>Fribourg-en-Brisgau</li>
<li>Prague</li>
<li>Vienne (Autriche)</li>
</settlement>
<orgName>
<li>Université Harvard</li>
</orgName>
</list>
<tree>
<country name="États-Unis">
<region name="Massachusetts">
<name sortKey="Zimkus, Breda M" sort="Zimkus, Breda M" uniqKey="Zimkus B" first="Breda M" last="Zimkus">Breda M. Zimkus</name>
</region>
<name sortKey="Dash, Katrina M" sort="Dash, Katrina M" uniqKey="Dash K" first="Katrina M" last="Dash">Katrina M. Dash</name>
<name sortKey="Greenbaum, Eli" sort="Greenbaum, Eli" uniqKey="Greenbaum E" first="Eli" last="Greenbaum">Eli Greenbaum</name>
<name sortKey="Lawson, Lucinda P" sort="Lawson, Lucinda P" uniqKey="Lawson L" first="Lucinda P" last="Lawson">Lucinda P. Lawson</name>
</country>
<country name="Allemagne">
<region name="Berlin">
<name sortKey="Barej, Michael F" sort="Barej, Michael F" uniqKey="Barej M" first="Michael F" last="Barej">Michael F. Barej</name>
</region>
<name sortKey="Dehling, J Maximilian" sort="Dehling, J Maximilian" uniqKey="Dehling J" first="J Maximilian" last="Dehling">J Maximilian Dehling</name>
<name sortKey="Gehring, Philip Sebastian" sort="Gehring, Philip Sebastian" uniqKey="Gehring P" first="Philip-Sebastian" last="Gehring">Philip-Sebastian Gehring</name>
<name sortKey="Lotters, Stefan" sort="Lotters, Stefan" uniqKey="Lotters S" first="Stefan" last="Lötters">Stefan Lötters</name>
<name sortKey="Penner, Johannes" sort="Penner, Johannes" uniqKey="Penner J" first="Johannes" last="Penner">Johannes Penner</name>
<name sortKey="Rodel, Mark Oliver" sort="Rodel, Mark Oliver" uniqKey="Rodel M" first="Mark-Oliver" last="Rödel">Mark-Oliver Rödel</name>
<name sortKey="Vences, Miguel" sort="Vences, Miguel" uniqKey="Vences M" first="Miguel" last="Vences">Miguel Vences</name>
</country>
<country name="Suisse">
<noRegion>
<name sortKey="Barratt, Christopher D" sort="Barratt, Christopher D" uniqKey="Barratt C" first="Christopher D" last="Barratt">Christopher D. Barratt</name>
</noRegion>
</country>
<country name="Afrique du Sud">
<noRegion>
<name sortKey="Channing, Alan" sort="Channing, Alan" uniqKey="Channing A" first="Alan" last="Channing">Alan Channing</name>
</noRegion>
<name sortKey="Du Preez, Louis" sort="Du Preez, Louis" uniqKey="Du Preez L" first="Louis" last="Du Preez">Louis Du Preez</name>
<name sortKey="Harvey, James" sort="Harvey, James" uniqKey="Harvey J" first="James" last="Harvey">James Harvey</name>
</country>
<country name="République tchèque">
<region name="Bohême centrale">
<name sortKey="Gvozdik, Vaclav" sort="Gvozdik, Vaclav" uniqKey="Gvozdik V" first="Václav" last="Gvoždík">Václav Gvoždík</name>
</region>
</country>
<country name="Danemark">
<region name="Hovedstaden">
<name sortKey="Kielgast, Jos" sort="Kielgast, Jos" uniqKey="Kielgast J" first="Jos" last="Kielgast">Jos Kielgast</name>
</region>
</country>
<country name="Oman">
<noRegion>
<name sortKey="Kusamba, Chifundera" sort="Kusamba, Chifundera" uniqKey="Kusamba C" first="Chifundera" last="Kusamba">Chifundera Kusamba</name>
</noRegion>
</country>
<country name="Belgique">
<region name="Vienne (Autriche)">
<name sortKey="Nagy, Zoltan T" sort="Nagy, Zoltan T" uniqKey="Nagy Z" first="Zoltán T" last="Nagy">Zoltán T. Nagy</name>
</region>
</country>
<country name="Pologne">
<noRegion>
<name sortKey="Pabijan, Maciej" sort="Pabijan, Maciej" uniqKey="Pabijan M" first="Maciej" last="Pabijan">Maciej Pabijan</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>

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